Add pragmas, hard_reset, and vacuum for tuning disk-backed caches
This commit is contained in:
@@ -49,3 +49,4 @@ AGENTS.md
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CLAUDE.md
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DESIGN_DOCUMENT_MODULE.md
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.claude/
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handover.md
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@@ -6,6 +6,21 @@ All notable changes to this project will be documented in this file.
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---
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## [1.11.0] - 2026-06-09
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### Added
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- **`pragmas=` parameter on `CachingEngine` / `CacheManager`** — pass a dict of SQLite PRAGMAs (e.g. `mmap_size`, `cache_size`, `temp_store`, `page_size`, `auto_vacuum`) applied to the cache connection at open time, so disk-backed caches can be tuned for the host's I/O profile without bypassing `CacheManager`. Unknown/inapplicable pragmas are silently ignored by SQLite (graceful degradation, no startup crash).
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- **`page_size`** is a layout pragma: it is applied only on a *fresh* file (set before WAL / the first table). On an existing cache with a different page size the request is ignored and a one-time warning is logged — the new value takes effect only after `hard_reset()` or a rebuild.
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- **`auto_vacuum`** is set before the database header is materialized (before switching to WAL) on a fresh file, so `INCREMENTAL`/`FULL` actually stick instead of silently reverting to `NONE`.
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- **`CachingEngine.hard_reset()` / `CacheManager.hard_reset()`** — close every connection, delete the on-disk cache file (and its `-wal`/`-shm` sidecars) and reopen from scratch with all current pragmas applied. Unlike `reset()` (which drops tables but keeps the open file), this lets `page_size`/`auto_vacuum` change, since those are baked into the file at creation. Disk mode only — falls back to `reset()` in memory mode. All tables reload on next use.
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- **`CachingEngine.vacuum(incremental=True, pages=10_000)` / `CacheManager.vacuum(...)`** — run maintenance VACUUM on the on-disk cache to reclaim free pages left by delta `INSERT OR REPLACE` churn. Incremental (default) reclaims up to `pages` pages without blocking readers or extra disk (requires `auto_vacuum=INCREMENTAL`); `incremental=False` runs a full VACUUM (rewrites the file, ~2× disk, blocks readers — maintenance window only). No-op in memory mode.
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### Changed
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- `pyproject.toml` — bumped version to `1.11.0`.
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- `ColumnRegistry` gained `rebind()` so it follows the cache connection swap performed by `hard_reset()` (the registry previously captured the connection for the process lifetime).
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---
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## [1.10.0] - 2026-06-09
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### Added
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@@ -263,17 +263,44 @@ engine = CachingEngine(base_engine, in_memory=False)
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The constructor argument wins over the env var; when `in_memory` is omitted it falls back to `SQLMEM_IN_MEMORY`.
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#### Tuning the SQLite layer (`pragmas=`)
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For a large disk-backed cache, pass SQLite PRAGMAs to tune the read path and on-disk layout without bypassing SQLmem:
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```python
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engine = CachingEngine(
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base_engine,
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in_memory=False,
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pragmas={
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"mmap_size": 32 * 1024**3, # map the DB into the address space (32 GB)
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"cache_size": -262144, # 256 MB page cache (negative = KiB)
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"temp_store": 2, # ORDER BY / GROUP BY scratch in RAM
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"page_size": 8192, # larger pages → fewer reads on range scans
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"auto_vacuum": "INCREMENTAL",# reclaim free pages with vacuum() (see below)
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},
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)
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```
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- Every entry is applied as `PRAGMA <key> = <value>` when the cache connection opens. **Unknown or inapplicable pragmas are silently ignored** by SQLite, so a bad value degrades gracefully instead of crashing startup.
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- **`page_size` and `auto_vacuum` are layout pragmas** — they only take effect on a *fresh* file (set before the first table). On an existing cache, `page_size` is ignored with a one-time warning; use [`hard_reset()`](#manual-cache-control) to rebuild the file with the new value.
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## Manual cache control
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```python
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engine.invalidate("orders") # drop one table from cache; next query re-fetches it from DB
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engine.reset() # wipe the whole cache (RAM + cache.db) — full clean slate
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engine.hard_reset() # disk mode: delete the file and reopen with current pragmas/page_size
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engine.vacuum() # disk mode: incremental VACUUM (reclaim free pages from delta churn)
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engine.refresh() # pull deltas for all delta-tracked tables now
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engine.close() # flush to disk and shut down background thread
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```
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Use `reset()` after a **structural change** in the source (columns added/removed, values cleared in bulk without bumping the change timestamp) so the cache rebuilds from scratch. `invalidate(table)` is the targeted version for a single table.
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`hard_reset()` goes further than `reset()` in disk mode: it closes every connection, deletes `cache.db` (and its `-wal`/`-shm` sidecars) and reopens from scratch — the only way to change a baked-in `page_size`/`auto_vacuum`. In memory mode it falls back to `reset()`.
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`vacuum()` reclaims free pages left behind by delta `INSERT OR REPLACE` churn. Incremental (the default) is cheap and non-blocking but needs `auto_vacuum=INCREMENTAL`; `vacuum(incremental=False)` runs a full VACUUM that rewrites the file (~2× disk, blocks readers) — schedule it in a maintenance window. Both are no-ops in memory mode.
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## Runtime statistics
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```python
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@@ -346,6 +373,7 @@ engine = CachingEngine(
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refresh_interval=300, # SQLMEM_REFRESH_INTERVAL
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fetch_batch=10000, # SQLMEM_FETCH_BATCH
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dialect="tsql", # SQLMEM_SQL_DIALECT
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pragmas={"mmap_size": 32 * 1024**3, "page_size": 8192}, # disk-mode SQLite tuning
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blocking_startup_refresh=False, # block startup until caught up? (default: no)
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)
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```
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+4
-1
@@ -215,10 +215,13 @@ SQLMEM_DEBUG=true # DEBUG level — podrobný výpis každého dotazu, cache o
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- [x] **Quoting identifikátorů**: názvy tabulek/sloupců se kvótují (SQLite `"x"` pro cache, dialekt zdroje — T-SQL `[x]` — pro source), takže rezervovaná slova i mezery fungují.
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- [x] **Lazy source connection**: `execute()` neotevírá spojení ke zdroji při cache hitu (neobsazuje pool slot).
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- [x] **Idempotentní `add_sink`**: opakované volání pro stejný sink je no-op (žádné duplicitní logy).
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- [x] **Ladění SQLite vrstvy (`pragmas=`)**: `CachingEngine(..., pragmas={...})` aplikuje libovolné PRAGMA na cache spojení (`mmap_size`, `cache_size`, `temp_store`, `page_size`, `auto_vacuum`). `page_size` a `auto_vacuum` jsou layout-pragmata — platí jen na čerstvém souboru (page_size na existující cache se ignoruje s warningem). Neznámá pragmata SQLite tiše ignoruje.
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- [x] **`hard_reset()`**: smaže on-disk soubor (+ WAL/SHM) a otevře nový s aktuálními pragmaty — na rozdíl od `reset()` umožní změnit `page_size`/`auto_vacuum`. Jen disk mód (v memory módu fallback na `reset()`).
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- [x] **`vacuum(incremental=, pages=)`**: údržbový VACUUM cache souboru — inkrementální (uvolní volné stránky po delta `INSERT OR REPLACE`, vyžaduje `auto_vacuum=INCREMENTAL`) nebo plný (přepíše soubor, jen v maintenance okně). V memory módu no-op.
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## TODO — budoucí funkce
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- _(zatím žádné otevřené položky)_
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- [ ] **Nativní INTEGER ukládání datetime sloupců (`datetime_columns=`)** — `CHANGE_DATE` apod. jako µs-od-epochy INTEGER místo 28 B ISO TEXT (úspora místa + rychlejší porovnání indexu). Breaking (`SCHEMA_VERSION` 3→4, wipe cache). Plán pro 1.12.0.
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---
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+1
-1
@@ -1,6 +1,6 @@
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[project]
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name = "sqlmem"
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version = "1.10.0"
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version = "1.11.0"
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description = ""
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authors = [
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{name = "jan.doubravsky@gmail.com"}
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+119
-3
@@ -40,12 +40,14 @@ class CacheManager:
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in_memory: bool = True,
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dialect: str = SQL_DIALECT,
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fetch_batch: int = FETCH_BATCH_SIZE,
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pragmas: dict[str, str | int] | None = None,
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) -> None:
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self._db_path = db_path
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self._backup_interval = backup_interval
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self._in_memory = in_memory
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self._dialect = dialect # source-DB dialect, for identifier quoting
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self._fetch_batch = fetch_batch # rows fetched per source batch
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self._pragmas = dict(pragmas or {}) # extra read/layout PRAGMAs (disk mode)
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self._lock = threading.Lock() # serializes connection access
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self._load_lock = threading.Lock() # serializes full table loads
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self._states: dict[str, str] = {} # table → live processing state
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@@ -59,12 +61,12 @@ class CacheManager:
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if in_memory:
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self._conn = sqlite3.connect(":memory:", check_same_thread=False)
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self._apply_pragmas(self._conn)
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else:
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# Disk-backed: query the on-disk file directly — no RAM copy, every
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# write persists immediately, and the cache can exceed available RAM.
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self._conn = sqlite3.connect(str(db_path), check_same_thread=False)
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self._conn.execute("PRAGMA journal_mode=WAL")
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self._conn.execute("PRAGMA synchronous=NORMAL")
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db_existed = db_path.exists() and db_path.stat().st_size > 0
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self._conn = self._open_disk_connection(db_existed)
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self._discard_if_schema_mismatch()
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self._ensure_meta_tables()
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@@ -83,6 +85,54 @@ class CacheManager:
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def connection(self) -> sqlite3.Connection:
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return self._conn
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def _open_disk_connection(self, db_existed: bool) -> sqlite3.Connection:
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"""Open the on-disk cache connection with WAL + the configured pragmas.
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``page_size`` and ``auto_vacuum`` are layout pragmas that only take
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effect on a *fresh* file (before the first table exists), so they are
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applied conditionally on ``db_existed``; everything else is applied
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unconditionally. Used by both ``__init__`` and :meth:`hard_reset`.
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"""
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conn = sqlite3.connect(str(self._db_path), check_same_thread=False)
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# page_size must be set before WAL/the first table on a brand-new file;
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# on an existing file it is silently ignored until the next VACUUM.
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if "page_size" in self._pragmas:
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wanted = int(self._pragmas["page_size"])
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if db_existed:
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actual = conn.execute("PRAGMA page_size").fetchone()[0]
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if actual != wanted:
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logger.warning(
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f"page_size={wanted} requested but the cache file already "
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f"exists with page_size={actual}; the new value takes "
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"effect only after the cache is wiped (hard_reset()) or "
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"rebuilt from scratch."
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)
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else:
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conn.execute(f"PRAGMA page_size = {wanted}")
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# auto_vacuum must be set before the database header is materialized,
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# i.e. before switching to WAL (which writes the header) — otherwise the
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# value silently reverts to 0/NONE and only a full VACUUM could apply it.
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if not db_existed and "auto_vacuum" in self._pragmas:
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conn.execute(f"PRAGMA auto_vacuum = {self._pragmas['auto_vacuum']}")
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conn.execute("PRAGMA journal_mode=WAL")
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conn.execute("PRAGMA synchronous=NORMAL")
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self._apply_pragmas(conn, exclude={"page_size", "auto_vacuum"})
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return conn
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def _apply_pragmas(
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self, conn: sqlite3.Connection, exclude: set[str] | None = None
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) -> None:
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"""Apply the user-supplied PRAGMAs to *conn*, skipping *exclude*.
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SQLite silently ignores unknown or inapplicable pragmas, so a bad value
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degrades gracefully (e.g. mmap unsupported) rather than crashing startup.
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"""
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skip = exclude or set()
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for key, value in self._pragmas.items():
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if key in skip:
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continue
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conn.execute(f"PRAGMA {key} = {value}")
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def _ensure_meta_tables(self) -> None:
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self._conn.executescript("""
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CREATE TABLE IF NOT EXISTS _sqlmem_meta (
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@@ -536,6 +586,72 @@ class CacheManager:
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except sqlite3.Error as e:
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logger.error(f"Failed to VACUUM cache file {self._db_path}: {e}")
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def hard_reset(self) -> None:
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"""Delete the on-disk cache file and reopen it from scratch.
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Unlike :meth:`reset` (which drops tables but keeps the open file, so the
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baked-in ``page_size``/``auto_vacuum`` cannot change), this closes every
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connection, removes the file plus its WAL/SHM sidecars, and reopens with
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all current pragmas applied — so layout pragmas take effect on the fresh
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file. Disk mode only; in memory mode it falls back to :meth:`reset`.
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Any read in flight on another thread will see its connection closed from
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under it; treat this as a maintenance operation.
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"""
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if self._in_memory:
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self.reset()
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return
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logger.info(f"Hard reset: closing connections and deleting {self._db_path}")
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with self._lock:
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for conn in self._read_conns:
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try:
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conn.close()
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except sqlite3.Error:
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pass
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self._read_conns.clear()
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self._read_local = threading.local() # force every thread to reopen
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self._conn.close()
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for suffix in ("", "-wal", "-shm"):
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p = Path(str(self._db_path) + suffix)
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if p.exists():
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p.unlink()
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# Reopen fresh — page_size/auto_vacuum apply to the new empty file.
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self._conn = self._open_disk_connection(db_existed=False)
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self._ensure_meta_tables()
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self._states.clear()
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self._errors.clear()
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self._last_run.clear()
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self._error_total = 0
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logger.info(f"Hard reset complete — cache recreated at {self._db_path}.")
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def vacuum(self, incremental: bool = True, pages: int = 10_000) -> None:
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"""Run maintenance VACUUM on the on-disk cache (no-op in memory mode).
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``incremental=True`` (default) reclaims up to *pages* free pages without
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blocking readers or needing extra disk space — but requires the cache to
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have been created with ``auto_vacuum=INCREMENTAL`` (otherwise it is a
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no-op). ``incremental=False`` runs a full ``VACUUM``: it rewrites the
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whole file (needs ~2× disk space, blocks readers) — use only in a
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maintenance window.
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"""
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if self._in_memory:
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logger.debug("vacuum() called in memory mode — no-op.")
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return
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if incremental:
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with self._lock:
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self._conn.execute(f"PRAGMA incremental_vacuum({pages})")
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self._conn.commit()
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logger.info(f"Incremental vacuum: reclaimed up to {pages} pages.")
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else:
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logger.info("Full VACUUM started — this may take several minutes.")
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with self._lock:
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self._conn.execute("VACUUM")
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logger.info("Full VACUUM complete.")
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def close(self) -> None:
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self._backup_to_disk()
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self._closed = True
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@@ -65,6 +65,7 @@ class CachingEngine:
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refresh_interval: int | None = None,
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fetch_batch: int | None = None,
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dialect: str | None = None,
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pragmas: dict[str, str | int] | None = None,
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blocking_startup_refresh: bool = False,
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) -> None:
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self._source_engine = source_engine
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@@ -79,6 +80,7 @@ class CachingEngine:
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in_memory=use_memory,
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dialect=self._dialect,
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fetch_batch=fetch_batch if fetch_batch is not None else FETCH_BATCH_SIZE,
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pragmas=pragmas,
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)
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self._registry = ColumnRegistry(self._cache.connection)
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self._stats = StatsCollector()
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@@ -267,6 +269,28 @@ class CachingEngine:
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self._cache.reset()
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logger.info("Cache reset — all tables will be reloaded on next use.")
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def hard_reset(self) -> None:
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"""Delete the on-disk cache file and reopen with current pragmas/page_size.
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Disk mode only (falls back to :meth:`reset` in memory mode). Use when a
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layout pragma — ``page_size`` or ``auto_vacuum`` — must change, since
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those are baked into the file at creation and :meth:`reset` keeps it.
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All tables reload on next use.
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"""
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self._cache.hard_reset()
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# hard_reset swaps the cache connection — re-point the registry at it.
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self._registry.rebind(self._cache.connection)
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logger.info("Cache hard reset — file recreated; all tables reload on next use.")
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def vacuum(self, incremental: bool = True, pages: int = 10_000) -> None:
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"""Run maintenance VACUUM on the on-disk cache (incremental by default).
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Incremental reclaims free pages left by delta ``INSERT OR REPLACE`` churn
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cheaply (requires ``auto_vacuum=INCREMENTAL``); a full VACUUM rewrites the
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whole file and should run only in a maintenance window.
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"""
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self._cache.vacuum(incremental=incremental, pages=pages)
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def close(self) -> None:
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self._cache.close()
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logger.info("CachingEngine closed.")
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@@ -12,6 +12,16 @@ class ColumnRegistry:
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self._lock = Lock()
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self._ensure_table()
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def rebind(self, mem_conn: sqlite3.Connection) -> None:
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"""Point the registry at a new cache connection (after a hard reset).
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``CacheManager.hard_reset`` closes and reopens the cache connection, so the
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connection object the registry captured at construction becomes invalid.
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"""
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with self._lock:
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self._conn = mem_conn
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self._ensure_table()
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def _ensure_table(self) -> None:
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self._conn.execute("""
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CREATE TABLE IF NOT EXISTS _sqlmem_columns (
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@@ -168,3 +168,123 @@ def test_disk_mode_reset_keeps_file(tmp_path, source_conn):
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assert db_path.exists()
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assert c.is_table_cached("users") is False
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c.close()
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# ---------------------------------------------------------------------------
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# Pragmas / layout tuning (1.11.0)
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# ---------------------------------------------------------------------------
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def test_pragmas_applied_on_fresh_disk_cache(tmp_path):
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"""page_size, auto_vacuum and a generic pragma all take effect on a new file."""
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c = CacheManager(
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db_path=tmp_path / "cache.db",
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backup_interval=9999,
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in_memory=False,
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pragmas={"page_size": 8192, "auto_vacuum": "INCREMENTAL", "cache_size": -2000},
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)
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assert c.connection.execute("PRAGMA page_size").fetchone()[0] == 8192
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assert c.connection.execute("PRAGMA auto_vacuum").fetchone()[0] == 2 # INCREMENTAL
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assert c.connection.execute("PRAGMA cache_size").fetchone()[0] == -2000
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c.close()
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def test_page_size_ignored_on_existing_file_warns(tmp_path):
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"""A page_size that differs from the existing file is ignored, with a warning."""
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db_path = tmp_path / "cache.db"
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c1 = CacheManager(db_path=db_path, backup_interval=9999, in_memory=False)
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assert c1.connection.execute("PRAGMA page_size").fetchone()[0] == 4096 # default
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c1.close()
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c2 = CacheManager(
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db_path=db_path,
|
||||
backup_interval=9999,
|
||||
in_memory=False,
|
||||
pragmas={"page_size": 16384},
|
||||
)
|
||||
# File keeps its original page size; the request is ignored (not an error).
|
||||
assert c2.connection.execute("PRAGMA page_size").fetchone()[0] == 4096
|
||||
c2.close()
|
||||
|
||||
|
||||
def test_unknown_pragma_does_not_crash(tmp_path):
|
||||
"""SQLite ignores unknown/inapplicable pragmas — startup must not fail."""
|
||||
c = CacheManager(
|
||||
db_path=tmp_path / "cache.db",
|
||||
backup_interval=9999,
|
||||
in_memory=False,
|
||||
pragmas={"this_is_not_a_pragma": 1, "mmap_size": 1024 * 1024},
|
||||
)
|
||||
assert c.connection.execute("PRAGMA mmap_size").fetchone()[0] == 1024 * 1024
|
||||
c.close()
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# hard_reset / vacuum (1.11.0)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_hard_reset_recreates_file_and_clears_tables(tmp_path, source_conn):
|
||||
db_path = tmp_path / "cache.db"
|
||||
c = CacheManager(db_path=db_path, backup_interval=9999, in_memory=False)
|
||||
c.load_table("users", ["name"], source_conn)
|
||||
assert c.is_table_cached("users") is True
|
||||
|
||||
c.hard_reset()
|
||||
assert db_path.exists() # reopened fresh
|
||||
assert c.is_table_cached("users") is False
|
||||
# The connection is usable again after the swap.
|
||||
c.load_table("users", ["name"], source_conn)
|
||||
assert c.is_table_cached("users") is True
|
||||
c.close()
|
||||
|
||||
|
||||
def test_hard_reset_applies_new_page_size(tmp_path, source_conn):
|
||||
"""page_size can't change via reset() but does via hard_reset() (fresh file)."""
|
||||
db_path = tmp_path / "cache.db"
|
||||
# Existing file at the default 4096; request 8192 — ignored on open.
|
||||
CacheManager(db_path=db_path, backup_interval=9999, in_memory=False).close()
|
||||
c = CacheManager(
|
||||
db_path=db_path,
|
||||
backup_interval=9999,
|
||||
in_memory=False,
|
||||
pragmas={"page_size": 8192},
|
||||
)
|
||||
assert c.connection.execute("PRAGMA page_size").fetchone()[0] == 4096
|
||||
c.hard_reset() # deletes the file → recreated with the requested page size
|
||||
assert c.connection.execute("PRAGMA page_size").fetchone()[0] == 8192
|
||||
c.close()
|
||||
|
||||
|
||||
def test_hard_reset_in_memory_falls_back_to_reset(tmp_path, source_conn):
|
||||
c = CacheManager(db_path=tmp_path / "cache.db", backup_interval=9999)
|
||||
c.load_table("users", ["name"], source_conn)
|
||||
c.hard_reset() # memory mode → reset()
|
||||
assert c.is_table_cached("users") is False
|
||||
c.close()
|
||||
|
||||
|
||||
def test_full_vacuum_runs_on_disk(tmp_path, source_conn):
|
||||
db_path = tmp_path / "cache.db"
|
||||
c = CacheManager(db_path=db_path, backup_interval=9999, in_memory=False)
|
||||
c.load_table("users", ["name"], source_conn)
|
||||
c.vacuum(incremental=False) # must not raise
|
||||
assert c.is_table_cached("users") is True
|
||||
c.close()
|
||||
|
||||
|
||||
def test_incremental_vacuum_runs_with_auto_vacuum(tmp_path, source_conn):
|
||||
c = CacheManager(
|
||||
db_path=tmp_path / "cache.db",
|
||||
backup_interval=9999,
|
||||
in_memory=False,
|
||||
pragmas={"auto_vacuum": "INCREMENTAL"},
|
||||
)
|
||||
c.load_table("users", ["name"], source_conn)
|
||||
c.vacuum(incremental=True, pages=100) # must not raise
|
||||
assert c.is_table_cached("users") is True
|
||||
c.close()
|
||||
|
||||
|
||||
def test_vacuum_in_memory_is_noop(cache, source_conn):
|
||||
cache.load_table("users", ["name"], source_conn)
|
||||
cache.vacuum(incremental=False) # no-op, no error
|
||||
assert cache.is_table_cached("users") is True
|
||||
|
||||
@@ -385,3 +385,39 @@ def test_two_engines_separate_cache_files(source_engine, tmp_path):
|
||||
assert b._cache.is_table_cached("products") is False # independent cache
|
||||
a.close()
|
||||
b.close()
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Pragmas / hard_reset / vacuum (1.11.0)
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
def test_engine_passes_pragmas_to_cache(source_engine, tmp_path):
|
||||
ce = CachingEngine(
|
||||
source_engine,
|
||||
cache_db_path=tmp_path / "cache.db",
|
||||
in_memory=False,
|
||||
pragmas={"page_size": 8192, "auto_vacuum": "INCREMENTAL"},
|
||||
)
|
||||
assert ce._cache.connection.execute("PRAGMA page_size").fetchone()[0] == 8192
|
||||
assert ce._cache.connection.execute("PRAGMA auto_vacuum").fetchone()[0] == 2
|
||||
ce.close()
|
||||
|
||||
|
||||
def test_engine_hard_reset_reloads(source_engine, tmp_path):
|
||||
ce = CachingEngine(source_engine, cache_db_path=tmp_path / "cache.db", in_memory=False)
|
||||
ce.execute("SELECT id FROM products")
|
||||
assert ce._cache.is_table_cached("products") is True
|
||||
|
||||
ce.hard_reset()
|
||||
assert ce._cache.is_table_cached("products") is False
|
||||
rows = ce.execute("SELECT id, name FROM products") # reloads on next use
|
||||
assert len(rows) == 3
|
||||
ce.close()
|
||||
|
||||
|
||||
def test_engine_vacuum_runs(source_engine, tmp_path):
|
||||
ce = CachingEngine(source_engine, cache_db_path=tmp_path / "cache.db", in_memory=False)
|
||||
ce.execute("SELECT id FROM products")
|
||||
ce.vacuum(incremental=False) # must not raise
|
||||
assert ce._cache.is_table_cached("products") is True
|
||||
ce.close()
|
||||
|
||||
Reference in New Issue
Block a user